Learning Epidemic Threshold Equations from Simulation: REEBLRA, an Interpretable Bayesian Classification Framework for Reproduction Numbers
q-bio.QM, q-bio.PE
Submitted: 2026-10-21
Updated: 2026-10-21
Comments: 106 pages including Supplementary Information, 8 figures, 55 tables
License: http://creativecommons.org/licenses/by-nc-nd/4.0/
The gist: The basic reproduction number, R 0, is central to infectious-disease modelling, yet analytic expressions can be difficult to derive for high-dimensional, nonlinear, or structurally complex models.
Abstract
The basic reproduction number, R 0, is central to infectious-disease modelling, yet analytic expressions can be difficult to derive for high-dimensional, nonlinear, or structurally complex models. We introduce REEBLRA (R 0 Equation Estimation using Bayesian Logistic Regression Algorithm), an interpretable framework that learns explicit surrogate equations for epidemic thresholds from parameter--response data. Rather than directly regressing R 0, REEBLRA estimates R 0(θ)>c for parameter vector θ and threshold c. It provides a binary equation for classifying epidemic invasion (R 0>1) and successive threshold equations defining ordered brackets that approximate R 0, the expected number of secondary infections caused by a typical case in a fully susceptible population. The resulting equations support parameter screening, sensitivity interpretation, threshold classification, and exploratory analysis when analytic derivation is cumbersome. Bayesian logistic regression using standardized polynomial-like features and proper weakly informative priors yields regularized estimates, posterior uncertainty, and finite coefficients under complete or quasi-complete separation. We establish a mechanistic--surrogate concordance principle linking the full fitted-score gradient to the local gradient of R 0 under explicit regularity and tangency assumptions, allowing conditional interpretation of threshold directions. Across seven analytic-label benchmarks associated with ODE models, including a 15-compartment five-group SIR system, five-fold binary AUC was 0.999--1.000 and ordered-bracket accuracy was 0.951--0.998. REEBLRA complements rather than replaces mechanistic derivations, bridging simulation, machine learning, and reproduction-number analysis. An accompanying Shiny app supports implementation.
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