Lightweight Vision Transformer-Based U-Net for Brain Tumor Segmentation from MRI

arXiv:2609.29785 · cs.CV · Submitted 2026-09-24 · Read on arXiv

cs.CV

Submitted: 2026-09-24

Updated: 2026-09-24

Comments: Accepted at The 2026 IEEE International Conference on Biomedical Engineering, Computer and Information Technology for Health (BECITHCON)

License: http://creativecommons.org/licenses/by/4.0/

The gist: Accurate brain tumor segmentation from Magnetic Resonance Imaging is essential for diagnosis, treatment planning, and surgical guidance.

Terminology

Abstract

Accurate brain tumor segmentation from Magnetic Resonance Imaging is essential for diagnosis, treatment planning, and surgical guidance. Although Convolutional Neural Networks, particularly UNet, have achieved significant success in medical image segmentation, they often struggle to capture the long-range spatial dependencies required to model tumors with irregular shapes and complex boundaries. This paper proposes a lightweight Vision Transformer UNet that combines the hierarchical feature extraction capability of UNet with the global context modeling of Vision Transformers. The proposed architecture incorporates a compact ViT bottleneck within a U-Net encoder-decoder framework, enabling effective learning of both local and global features while maintaining computational efficiency with only 2.6 million trainable parameters. The model was evaluated on the TCGA LGG MRI Segmentation dataset, achieving a mean Intersection over Union of 0.8100 and a Dice score of 0.8446, outperforming the baseline UNet by 3.75% and 3.15%, respectively. Extensive quantitative and qualitative analyses, including confusion matrix evaluation, precision recall curves, per-image performance distribution, and tumor size dependency analysis, demonstrate the effectiveness and robustness of the proposed method for brain tumor segmentation.

Sources

Related papers