Neighborhood-Aware Dual Biomedical Entity Linking

arXiv:2608.04144 · cs.IR, cs.CL, cs.LG · Submitted 2026-08-04 · Read on arXiv

Yicheng Tao, Jie Liu

cs.IR, cs.CL, cs.LG

Submitted: 2026-08-04

License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/

Terminology

• Benchmark — 7× in this paper · explained in 2 episodes
• Hyperparameters — 7× in this paper · explained in 2 episodes
• Ontology — 7× in this paper · explained in 2 episodes
• Papers — 5× in this paper · explained in 3 episodes
• Ablation — 4× in this paper · explained in 1 episode
• Embeddings — 4× in this paper · explained in 2 episodes
• Fine-Tuning — 4× in this paper · explained in 5 episodes
• Ablation Study — 3× in this paper · explained in 3 episodes
• Decode — 3× in this paper · explained in 2 episodes
• Absorb — 2× in this paper · explained in 1 episode
• Accuracy — 2× in this paper · explained in 1 episode
• Reinforcement Learning — 2× in this paper · explained in 4 episodes
• Clarity — 1× in this paper · explained in 3 episodes
• Contrastive Learning — 1× in this paper · explained in 9 episodes
• Core — 1× in this paper · explained in 2 episodes
• Evaluation Protocol — 1× in this paper · explained in 2 episodes
• False Negatives — 1× in this paper · explained in 2 episodes
• Foundation Model — 1× in this paper · explained in 3 episodes
• Foundation Models — 1× in this paper · explained in 8 episodes
• In-Context Learning — 1× in this paper · explained in 7 episodes
• RAG — 1× in this paper · explained in 3 episodes
• Transformer — 1× in this paper · explained in 2 episodes
• Transformers — 1× in this paper · explained in 2 episodes

Sources

• DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning
• GPT-4 Technical Report
• MedMentions: A Large Biomedical Corpus Annotated with UMLS Concepts
• Multi-Stage Document Ranking with BERT
• RankZephyr: Effective and Robust Zero-Shot Listwise Reranking is a Breeze!
• Qwen3 Technical Report
• Qwen3 Embedding: Advancing Text Embedding and Reranking Through Foundation Models

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