Bio papers — 2026-10-24
The Morning Preprint — this day as one edition: the day's papers, the five things worth knowing, and the episodes behind them.
Today's work centers on how biological systems manage information flow under constraints, particularly looking at the neuromuscular junction and cardiovascular modeling. The paper on predictions for and lack of maximal information transmission in the neuromuscular junction explores whether the way neurotransmitter concentration is transformed into current at both cholinergic and glutamatergic NMJs maximizes information transfer. Experimental results showed little agreement with theoretical predictions in this area. This contrasts with structural explorations, such as those concerning distance-bounded phylogenetic reconciliation, which investigate how to map parasite trees onto host trees by studying cycles in the reconciliation process Structural properties of distance-bounded phylogenetic reconciliation.
Moving toward dynamical systems, the work on lattice Brownian bees with cooperative reproduction examines population dynamics in a model where birth events involve removing the farthest particle from the origin Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading. This analysis shows that for certain reproduction rates, the population can either spread diffusively or undergo a finite-time collapse to the origin. This behavior depends on whether the rate is above or below a critical point. This concept of regime switching is related to how other models exhibit different behaviors based on parameter tuning.
In terms of physical modeling, there are significant efforts in simulating complex biological structures and processes. One study presents a mathematical model for pulsatile hemodynamics that incorporates the entire pulmonary circulation, explicitly linking everything from large arteries down to venules Multiscale hemodynamics model for the pulmonary arteries, arterioles, capillaries, venules and veins. This modeling showed that including capillary structure significantly alters hemodynamic predictions by introducing damping effects in both healthy controls and patients with pulmonary hypertension.
Another modeling effort focuses on pediatric hemodynamics. This combines a lumped parameter cardiovascular system with size-dependent resistance and age-dependent scaling to understand how ventricular septal defects affect blood flow Mathematical simulations of pediatric hemodynamics in isolated ventricular septal defect.
Finally, there is work touching upon the limits of physicalist theories regarding consciousness. This includes a formalizable proof that suggests physicalist theories describing self-aware systems must be internally inconsistent A Formalizable Proof of the No-Supervenience Theorem: A Diagonal Limitation on the Viability of Physicalist Theories of Consciousness. This work establishes a diagonal limitation based on predicate modal logic to show that physicalist theories cannot fully account for consciousness.
Today's papers
- Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading We extend the Brownian bee model to include cooperative reproduction and study how the population behaves in different regimes. Mathematical simulations of pediatric hemodynamics in isolated ventricular septal defect This paper uses computer models to understand how a hole between heart chambers affects blood flow in children. Structural properties of distance-bounded phylogenetic reconciliation This study investigates how to optimally map parasite trees onto host trees while accounting for limited host switching distances. Predictions for and lack of maximal information transmission in the neuromuscular junction This research examines if the neuromuscular junction limits how much information can be passed from the nervous system to muscles. Multiscale hemodynamics model for the pulmonary arteries, arterioles, capillaries, venules and veins This paper presents a detailed mathematical model of blood flow through all parts of the lungs and shows how including capillaries changes pressure predictions. A Formalizable Proof of the No-Supervenience Theorem: A Diagonal Limitation on the Viability of Physicalist Theories of Consciousness This article provides a formal proof showing that physicalist theories cannot fully explain consciousness because they lead to internal contradictions. [paper] [episode]
- Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading We extend the Brownian bee model to include cooperative reproduction and study how the population behaves in different regimes. Mathematical simulations of pediatric hemodynamics in isolated ventricular septal defect This paper uses computer models to understand how a hole between heart chambers affects blood flow in children. Structural properties of distance-bounded phylogenetic reconciliation This study investigates how to optimally map parasite trees onto host trees while accounting for limited host switching distances. Predictions for and lack of maximal information transmission in the neuromuscular junction This research examines if the neuromuscular junction limits how much information can be passed from the nervous system to muscles. Multiscale hemodynamics model for the pulmonary arteries, arterioles, capillaries, venules and veins This paper presents a detailed mathematical model of blood flow through all parts of the lungs and shows how including capillaries changes pressure predictions. A Formalizable Proof of the No-Supervenience Theorem: A Diagonal Limitation on the Viability of Physicalist Theories of Consciousness This article provides a formal proof showing that physicalist theories cannot fully explain consciousness because they lead to internal contradictions. [paper] [episode]
- Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading We extend the Brownian bee model to include cooperative reproduction and study how the population behaves in different regimes. Mathematical simulations of pediatric hemodynamics in isolated ventricular septal defect This paper uses computer models to understand how a hole between heart chambers affects blood flow in children. Structural properties of distance-bounded phylogenetic reconciliation This study investigates how to optimally map parasite trees onto host trees while accounting for limited host switching distances. Predictions for and lack of maximal information transmission in the neuromuscular junction This research examines if the neuromuscular junction limits how much information can be passed from the nervous system to muscles. Multiscale hemodynamics model for the pulmonary arteries, arterioles, capillaries, venules and veins This paper presents a detailed mathematical model of blood flow through all parts of the lungs and shows how including capillaries changes pressure predictions. A Formalizable Proof of the No-Supervenience Theorem: A Diagonal Limitation on the Viability of Physicalist Theories of Consciousness This article provides a formal proof showing that physicalist theories cannot fully explain consciousness because they lead to internal contradictions. [paper] [episode]
- Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading We extend the Brownian bee model to include cooperative reproduction and study how the population behaves in different regimes. Mathematical simulations of pediatric hemodynamics in isolated ventricular septal defect This paper uses computer models to understand how a hole between heart chambers affects blood flow in children. Structural properties of distance-bounded phylogenetic reconciliation This study investigates how to optimally map parasite trees onto host trees while accounting for limited host switching distances. Predictions for and lack of maximal information transmission in the neuromuscular junction This research examines if the neuromuscular junction limits how much information can be passed from the nervous system to muscles. Multiscale hemodynamics model for the pulmonary arteries, arterioles, capillaries, venules and veins This paper presents a detailed mathematical model of blood flow through all parts of the lungs and shows how including capillaries changes pressure predictions. A Formalizable Proof of the No-Supervenience Theorem: A Diagonal Limitation on the Viability of Physicalist Theories of Consciousness This article provides a formal proof showing that physicalist theories cannot fully explain consciousness because they lead to internal contradictions. [paper] [episode]
- Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading We extend the Brownian bee model to include cooperative reproduction and study how the population behaves in different regimes. Mathematical simulations of pediatric hemodynamics in isolated ventricular septal defect This paper uses computer models to understand how a hole between heart chambers affects blood flow in children. Structural properties of distance-bounded phylogenetic reconciliation This study investigates how to optimally map parasite trees onto host trees while accounting for limited host switching distances. Predictions for and lack of maximal information transmission in the neuromuscular junction This research examines if the neuromuscular junction limits how much information can be passed from the nervous system to muscles. Multiscale hemodynamics model for the pulmonary arteries, arterioles, capillaries, venules and veins This paper presents a detailed mathematical model of blood flow through all parts of the lungs and shows how including capillaries changes pressure predictions. A Formalizable Proof of the No-Supervenience Theorem: A Diagonal Limitation on the Viability of Physicalist Theories of Consciousness This article provides a formal proof showing that physicalist theories cannot fully explain consciousness because they lead to internal contradictions. [paper] [episode]
- Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading We extend the Brownian bee model to include cooperative reproduction and study how the population behaves in different regimes. Mathematical simulations of pediatric hemodynamics in isolated ventricular septal defect This paper uses computer models to understand how a hole between heart chambers affects blood flow in children. Structural properties of distance-bounded phylogenetic reconciliation This study investigates how to optimally map parasite trees onto host trees while accounting for limited host switching distances. Predictions for and lack of maximal information transmission in the neuromuscular junction This research examines if the neuromuscular junction limits how much information can be passed from the nervous system to muscles. Multiscale hemodynamics model for the pulmonary arteries, arterioles, capillaries, venules and veins This paper presents a detailed mathematical model of blood flow through all parts of the lungs and shows how including capillaries changes pressure predictions. A Formalizable Proof of the No-Supervenience Theorem: A Diagonal Limitation on the Viability of Physicalist Theories of Consciousness This article provides a formal proof showing that physicalist theories cannot fully explain consciousness because they lead to internal contradictions. [paper] [episode]
The papers
- Mathematical simulations of pediatric hemodynamics in isolated ventricular septal defect — The gist The study combines a lumped parameter model of the cardiovascular system with size-dependent resistance and age-dependent scaling relationships to simulate pediatric hemodynamics in isolated ventricular septal defect (VSD) from one day to two years old, providing insight [episode]
- Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading — The gist The authors extend a Brownian bees model to cooperative reproduction, determining steady states and dynamical regimes based on the reproduction rate parameter k, finding stability transitions at k=3 and distinct behaviors for k<3, k=3, and k≥4. [episode]
- Structural properties of distance-bounded phylogenetic reconciliation — The gist Finding an optimal reconciliation that ensures time feasibility is computationally hard when timing information is incomplete, and larger values are unresolved, but this paper studies the cases d = 3 and d = 4 to show that it suffices to check only bounded-size cycles pr [episode]
- Predictions for and lack of maximal information transmission in the neuromuscular junction — The gist: The theoretical and experimental distributions for neurotransmitter concentrations at the Drosophila neuromuscular junction show very little agreement, indicating that the Drosophila NMJ does not shape its distribution of synaptic vesicle release probabilities in order [episode]
- Multiscale hemodynamics model for the pulmonary arteries, arterioles, capillaries, venules and veins — The gist: This study presents the first mathematical model of pulsatile hemodynamics that encompasses the complete pulmonary circulation, explicitly linking the large arteries, arterioles, capillaries, venules and veins. [episode]
- A Formalizable Proof of the No-Supervenience Theorem: A Diagonal Limitation on the Viability of Physicalist Theories of Consciousness — The gist: The proof demonstrates that any physicalist theory describing a self-aware, intelligent system must be internally inconsistent by showing that it implies an infinite number of distinguishable brain states, which no physical system can accommodate. [episode]
Important terms
- Neuromuscular Junction (NMJ) Information Transfer
- This research investigates how biological systems manage information flow at the NMJ, specifically testing if transforming neurotransmitter concentration into current maximizes data transmission. Experimental results showed this doesn't match theoretical predictions.
- Lattice Brownian Bees Dynamics
- This model studies population dynamics where reproduction involves removing the farthest particle. It shows that population spread can be diffusive or lead to a finite-time collapse depending on the reproduction rate relative to a critical point.
- Multiscale Hemodynamics Model
- This mathematical model simulates blood flow through the entire pulmonary circulation, from large arteries down to venules. Including capillary structure significantly changes predictions for both healthy and hypertensive patients.
- Pediatric Hemodynamics Modeling
- This work combines a lumped parameter cardiovascular system with size-dependent resistance to understand how defects like ventricular septal defects affect blood flow in children.